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ibis.iSDM - Modelling framework for integrated biodiversity distribution scenarios

Integrated framework of modelling the distribution of species and ecosystems in a suitability framing. This package allows the estimation of integrated species distribution models (iSDM) based on several sources of evidence and provided presence-only and presence-absence datasets. It makes heavy use of point-process models for estimating habitat suitability and allows to include spatial latent effects and priors in the estimation. To do so 'ibis.iSDM' supports a number of engines for Bayesian and more non-parametric machine learning estimation. Further, the 'ibis.iSDM' is specifically customized to support spatial-temporal projections of habitat suitability into the future.

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bayesianbiodiversityecologyintegrated-frameworkpoisson-processscenariossdmspatial-grainspatial-predictionsspecies-distribution-modellingcpp

4.34 score 23 stars 1 dependents 16 scripts

mapspam2globiom - An R package to create crop distribution maps as input for GLOBIOM

The aim of the mapspam2globiom R package is to facilitate the creation of country level crop distribution maps, which can be used as input by the IIASA's Global Biosphere Management Model (GLOBIOM) for a selected country. mapspam2globiom includes several functions to aggregate crop distribution maps that were created with the mapspamc package (Van Dijk et al. 2022) to the GLOBIOM input format. mapspamc was specifically developed to create national crop distribution maps using the Spatial Production Allocation Model (SPAM) (You and Wood 2006; You, Wood, and Wood-Sichra 2009; You et al. 2014; Yu et al. 2020).

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3.78 score 3 stars 1 scripts

ODPSCP - A standard reporting protocol for conservation planning

This repository contains the environment and shiny code underlying the reporting protocol.

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conservation-prioritizationprotocolr-shinystandardsystematic-conservation-planning

2.30 score 2 stars 3 scripts

ibis.insights - An R Implementation of the InSiGHTS Framework

Implements the InSiGHTS (Index of Habitat Availability) modelling framework for assessing how climate change and land-use change affect the availability of suitable habitat for species over time. The package refines binary range maps or probabilistic species distribution models (SDMs) with fractional land-use layers to produce area-of-habitat (AOH) estimates across present and future time steps. An optional temporal discount function accounts for habitat maturity, allowing newly established land cover to be weighted according to its effective ecological value. Output summaries express habitat availability as absolute area or as a relative index with respect to a user-defined reference year. The package is designed to work seamlessly with the ibis.iSDM package but can also accept any SpatRaster or stars object as range input.

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area-of-habitatbiodiversitybiodiversity-indicatorsiucnland-userange

2.18 score 1 stars 6 scripts

rN2000 - Package for downloading, querying and processing of Natura 2000 data

This package provides functionalities to download, process and visualize Natura 2000 data. Functions allow the filtering, conversion and exporting of critical habitat and species data.

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2.18 score 3 stars 2 scripts

BNRTools - A suite of convenience functions created by IIASA BNR Researchers

What the package does (one paragraph).

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1.70 score 1 scripts

BioCal - Calculate Biomass Based on Forest Data

This package provides tools for calculating the biomass of trees based on country, species, compartment, diameter, and height. The calculations use specific allometric equations tailored for different tree species across various biogeographical zones. Use four spaces when indenting paragraphs within the Description.

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1.70 score 1 scripts