Package: ibis.insights 0.8

Martin Jung

ibis.insights: An R Implementation of the InSiGHTS Framework

Implements the InSiGHTS (Index of Habitat Availability) modelling framework for assessing how climate change and land-use change affect the availability of suitable habitat for species over time. The package refines binary range maps or probabilistic species distribution models (SDMs) with fractional land-use layers to produce area-of-habitat (AOH) estimates across present and future time steps. An optional temporal discount function accounts for habitat maturity, allowing newly established land cover to be weighted according to its effective ecological value. Output summaries express habitat availability as absolute area or as a relative index with respect to a user-defined reference year. The package is designed to work seamlessly with the ibis.iSDM package but can also accept any SpatRaster or stars object as range input.

Authors:Martin Jung [aut, cre]

ibis.insights_0.8.tar.gz
ibis.insights_0.8.zip(r-4.7-any)ibis.insights_0.8.zip(r-4.6-any)ibis.insights_0.8.zip(r-4.5-any)
ibis.insights_0.8.tgz(r-4.6-any)ibis.insights_0.8.tgz(r-4.5-any)
ibis.insights_0.8.tar.gz(r-4.7-any)ibis.insights_0.8.tar.gz(r-4.6-any)
ibis.insights_0.8.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION |NEWS
card.svg |card.png
ibis.insights/json (API)

# Install 'ibis.insights' in R:
install.packages('ibis.insights', repos = c('https://iiasa.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/iiasa/ibis.insights/issues

Pkgdown/docs site:https://iiasa.github.io

On CRAN:

Conda:

area-of-habitatbiodiversitybiodiversity-indicatorsiucnland-userange

2.18 score 1 stars 6 scripts 10 exports 71 dependencies

Last updated from:2d25c97b75. Checks:7 WARNING, 1 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64WARNING245
source / vignettesERROR303
linux-release-x86_64WARNING244
macos-release-arm64WARNING145
macos-oldrel-arm64WARNING191
windows-develWARNING231
windows-releaseWARNING201
windows-oldrelWARNING209
wasm-releaseOK145

Exports:align_temporalapply_elevation_maskcreate_elevation_maskinsights_areainsights_discountinsights_fractioninsights_summaryrelChangerelChangeSymst_clamp

Dependencies:abindassertthatbackportscheckmateclassclassIntclicodetoolscpp11crayonDBIdigestdistributionaldoFuturedplyre1071farverFNNforeachfuturefuture.applygenericsgeodistggplot2globalsgluegtablehmsibis.iSDMisobanditeratorsKernSmoothlabelinglatticelifecyclelistenvlubridatemagrittrMASSMatrixmatrixStatsncdf4numDerivparallellypillarpkgconfigposteriorprettyunitsprogressproxyR6RColorBrewerRcpprlangs2S7scalessfstarstensorAterratibbletidyselecttimechangeunitsutf8uuidvctrsviridisLitewithrwk

Readme and manuals

Help Manual

Help pageTopics
Harmonize and align temporal raster layersalign_temporal align_temporal,ANY,ANY-method align_temporal,SpatRaster,SpatRaster-method align_temporal,stars,stars-method
Apply an elevation suitability mask to a species projectionapply_elevation_mask
Recreate a derivative variable based on their rangecreate_derivate_range
Create an elevation suitability maskcreate_elevation_mask create_elevation_mask,ANY-method create_elevation_mask,SpatRaster-method create_elevation_mask,stars-method
Apply InSiGHTS with continuous areal land-use datainsights_area insights_area,BiodiversityScenario,ANY-method insights_area,DistributionModel,ANY-method insights_area,SpatRaster,SpatRaster-method insights_area,SpatRaster,stars-method insights_area,stars,SpatRaster-method insights_area,stars,stars-method
Apply temporal discount to land-use layers based on an age variableinsights_discount insights_discount,SpatRaster,SpatRaster-method insights_discount,SpatRaster,stars-method insights_discount,stars,SpatRaster-method insights_discount,stars,stars-method
Apply InSiGHTS with fractional land-use datainsights_fraction insights_fraction,BiodiversityScenario,ANY-method insights_fraction,DistributionModel,ANY-method insights_fraction,SpatRaster,SpatRaster-method insights_fraction,SpatRaster,stars-method insights_fraction,stars,SpatRaster-method insights_fraction,stars,stars-method
Summarize inSiGHTS into an indexinsights_summary insights_summary,SpatRaster-method insights_summary,stars-method
Relative change functionrelChange
Symmetric relative difference functionrelChangeSym
Clamp raster values to specific boundsst_clamp