{ "_id": "6ae53efd327abcdf868693a2", "Package": "hibiiscus", "Title": "Modelling framework for hierachical ecological impact analysis", "Version": "0.1", "Authors@R": "c(\nperson(\"Richard\", \"Cornford\", , \"cornford@iiasa.ac.at\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-9963-3603\")),\nperson(\"Martin\", \"Jung\", , \"martinjung@zoho.com\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-7569-1390\"))\n)", "Maintainer": "Richard Cornford ", "Description": "This package uses principles of hierarchical modelling to\nassess the impacts of land use and land-use intensity on\necological communities. Data and modelling approach originate\nfrom the PREDICTS framework and are adapted for use with\nalternative land-use categories (legends), integration of\nadditional ecological data, modelling with frequentist and\nBayesian approaches, and extended model evaluation.", "License": "CC BY 4.0", "URL": "https://github.com/iiasa/hibiiscus,\nhttps://iiasa.github.io/hibiiscus/", "BugReports": "https://github.com/iiasa/hibiiscus/issues", "VignetteBuilder": "knitr", "Additional_repositories": "https://inla.r-inla-download.org/R/testing", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Language": "en-GB", "Roxygen": "list(markdown = TRUE)", "Config/roxygen2/version": "8.1.1", "Config/pak/sysreqs": "libgdal-dev gdal-bin libgeos-dev libicu-dev\nlibproj-dev libsqlite3-dev", "Repository": "https://iiasa.r-universe.dev", "Date/Publication": "2026-10-30 21:51:15 UTC", "RemoteUrl": "https://github.com/iiasa/hibiiscus", "RemoteRef": "HEAD", "RemoteSha": "49f112111a4c564f7a7d353023cc518150ebab5b", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-31 01:01:09 UTC", "User": "root" }, "Author": "Richard Cornford [aut, cre] (ORCID:\n),\nMartin Jung [aut] (ORCID: )", "_user": "iiasa", "_type": "src", "_file": "hibiiscus_0.1.tar.gz", "_fileid": "https://r2.ropensci.org/c2b5bd8106dfef50a2480435eb3c2ec7457e971c579a4dc369b98b483d178f09", "_filesize": 2798334, "_sha256": "c2b5bd8106dfef50a2480435eb3c2ec7457e971c579a4dc369b98b483d178f09", "_expires": "2027-02-08T01:06:03.000Z", "_created": "2026-10-31T01:01:09.000Z", "_published": "2026-10-31T01:06:05.739Z", "_upstream": "https://github.com/iiasa/hibiiscus", "_status": "success", "_maintainer": { "name": "Richard Cornford", "email": "cornford@iiasa.ac.at", "login": "rcornf", "description": "", "uuid": 45459638, "orcid": "0000-0002-9963-3603" }, "_jobs": [ { "job": 124394405748, "time": 235, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "13024266327" }, { "job": 124394405660, "time": 196, "config": 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"_help": [ { "page": "hib_calc_aoa", "title": "hib_calc_aoa: Calculate the Area-of-Applicability.", "topics": [ "hib_calc_aoa" ] }, { "page": "hib_calc_div_between", "title": "Calculate between-site (within study) diversity metrics", "topics": [ "hib_calc_div_between" ] }, { "page": "hib_calc_div_within", "title": "Calculate within-site diversity metrics", "topics": [ "hib_calc_div_within" ] }, { "page": "hib_calc_site_contrasts", "title": "hib_calc_site_contrasts: Calculate differences between sites for a range of environmental variables.", "topics": [ "hib_calc_site_contrasts" ] }, { "page": "hib_create_db", "title": "hib_create_db: Create a 'HibDatabase' object from input files", "topics": [ "hib_create_db" ] }, { "page": "hib_create_lu_legend", "title": "hib_create_lu_legend: Create a 'new' land-use legend.", "topics": [ "hib_create_lu_legend" ] }, { "page": "hib_cv_model", "title": "hib_cv_model: Cross-validate a fitted hibiiscus mixed-effects model", "topics": [ "hib_cv_model" ] }, { "page": "hib_filter_sites", "title": "hib_filter_sites: Filter the database object by site-linked variables", "topics": [ "hib_filter_sites" ] }, { "page": "hib_filter_species", "title": "hib_filter_species: Filter the database object by species-linked features.", "topics": [ "hib_filter_species" ] }, { "page": "hib_fit_brms", "title": "hib_fit_brms: Fit a brms style mixed-effects model", "topics": [ "hib_fit_brms" ] }, { "page": "hib_fit_inla", "title": "hib_fit_inla: Fit an INLA mixed-effects model", "topics": [ "hib_fit_inla" ] }, { "page": "hib_fit_lme4", "title": "hib_fit_lme4: Fit an lme4 style mixed-effects model", "topics": [ "hib_fit_lme4" ] }, { "page": "hib_join_site_contrasts", "title": "hib_join_site_contrasts: Join external site-contrast information to a HibDatabase object", "topics": [ "hib_join_site_contrasts" ] }, { "page": "hib_join_sites", "title": "hib_join_sites: Join external site information to a HibDatabase object", "topics": [ "hib_join_sites" ] }, { "page": "hib_join_species", "title": "hib_join_species: Join external species information to a HibDatabase object", "topics": [ "hib_join_species" ] }, { "page": "hib_load", "title": "hib_load: Load Hib___ objects.", "topics": [ "hib_load" ] }, { "page": "hib_project_model", "title": "hib_project_model: Project a hibiiscus mixed-effects model", "topics": [ "hib_project_model" ] }, { "page": "hib_save", "title": "hib_save: Save Hib___ objects.", "topics": [ "hib_save" ] }, { "page": "hib_set_lu_legend", "title": "hib_set_lu_legend: Set a 'HibLULegend' as the LU legend in a 'HibDatabase'", "topics": [ "hib_set_lu_legend" ] }, { "page": "hib_update_db", "title": "hib_update_db: Update an existing 'HibDatabase' with further data", "topics": [ "hib_update_db" ] }, { "page": "HibCV-Class", "title": "HibCV", "topics": [ "HibCV" ] }, { "page": "HibDatabase-Class", "title": "HibDatabase", "topics": [ "HibDatabase" ] }, { "page": "HibLULegend-Class", "title": "HibLULegend", "topics": [ "HibLULegend" ] }, { "page": "HibModelBRMS-Class", "title": "HibModelBRMS", "topics": [ "HibModelBRMS" ] }, { "page": "HibModelINLA-Class", "title": "HibModelINLA", "topics": [ "HibModelINLA" ] }, { "page": "HibModelLME4-Class", "title": "HibModelLME4", "topics": [ "HibModelLME4" ] }, { "page": "HibProjection-Class", "title": "HibProjection", "topics": [ "HibProjection" ] }, { "page": "prep_globiom", "title": "prep_globiom: Prepare GLOBIOM output for projection.", "topics": [ "prep_globiom" ] } ], "_readme": "https://github.com/iiasa/hibiiscus/raw/HEAD/README.md", "_rundeps": [ "assertthat", "cli", "cpp11", "crayon", "dplyr", "generics", "glue", "lifecycle", "magrittr", "pillar", "pkgconfig", "purrr", "R6", "Rcpp", "rlang", "stringi", "stringr", "terra", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr" ], "_vignettes": [ { "source": "basic_use.Rmd", "filename": "basic_use.html", "title": "Basic usage", "author": "Richard Cornford", "engine": "knitr::rmarkdown", "headings": [ "1. Load package and PREDICTS-like data", "2. Filter data to remove sites in Oceania", "3. Condense land-use categories", "4. Correct measurements for sampling effort, calculate total abundance per site and Bray-curtis dissimilarity between sites (within studies).", "5. Fit a simple model of (rescaled) total abundance in response to land-use, and a simple model of Bray-Curtis dissimilarity.", "6. Cross-validate the fitted model, using both Random, and geographically blocked folds.", "7. Model projection", "8. 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